Pumpkin and Cream Cheese Muffins with Pecan Streusel

Few things go together as well as pumpkin and cream cheese. Sure there’s peanut butter and jelly, as well as peanut butter and chocolate, but warm and spicy pumpkin baked goods paired with sweet cream cheese is a match made in fall-baking heaven. Add to these muffins a pecan streusel topping and you will be hard-pressed to find a better breakfast treat once the weather starts to cool down. These pumpkin-cream cheese muffins have become one of my very favorite fall breakfast items; they taste like part muffin, part pumpkin cupcake, part coffee cake… all wonderful things in my book!

These muffins use a neat little trick to make sure that there is a nice little pocket of cream cheese in the middle and that it doesn’t float or spread out inside the muffins. The cream cheese filling mixture is prepared, shaped into a log and frozen for a couple of hours. When you’re ready to make the muffins, you put a little bit of batter in the muffin cups, then cut the log into even pieces and add a piece of frozen cream cheese filling, then add the remainder of the batter to the muffin cups.

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These muffins, as far as I’m concerned, are truly perfect. The muffin itself is moist and tender – not too airy, not too dense or dry. The cream cheese filling is as perfect a complement as I could imagine, and the pecan streusel on top is the icing on the cake. The pecans add some crunch and the streusel delivers those amazing crumbs synonymous with muffin tops and crumb cake that I can never get enough of.
I can’t think of a more amazing fall and winter breakfast treat than these muffins. They’re indulgent, cozy, and utterly delicious.


Pumpkin and Cream Cheese Muffins with Pecan Streusel
Ingredients
For the Cream Cheese Filling:
- 4 ounces (113.4 g) cream cheese, softened to room temperature
- ½ cup (60 g) powdered sugar
- 1½ teaspoons (1.5 teaspoons) vanilla extract
For the Streusel:
- ½ cup (62.5 g) all-purpose flour
- ⅓ cup (66.67 g) granulated sugar
- ½ teaspoon (0.5 teaspoon) ground cinnamon
- ¼ cup (24.75 g) pecans, roughly chopped
- 3 tablespoons unsalted butter, melted
For the Muffins:
- 1½ cups (187.5 g) all-purpose flour
- 1½ teaspoons (1.5 teaspoons) ground cinnamon
- ¾ teaspoon (0.75 teaspoon) ground nutmeg
- ½ teaspoon (0.5 teaspoon) ground cloves
- ½ teaspoon (0.5 teaspoon) ground ginger
- ¼ teaspoon (0.25 teaspoon) ground allspice
- ½ teaspoon (0.5 teaspoon) baking soda
- ½ teaspoon (0.5 teaspoon) salt
- 1 cup (200 g) granulated sugar
- 1 cup (245 g) canned pumpkin
- 2 eggs
- ½ cup (109 ml) + 2 tablespoons vegetable oil
- ½ teaspoon (0.5 teaspoon) vanilla extract
Instructions
- Make the Cream Cheese Filling In a medium bowl, stir together the cream cheese and confectioners' sugar until smooth. Add the vanilla, and stir to combine. Form the mixture into a 12-inch log on a piece of plastic wrap, wrap it in the plastic wrap and then again in foil, and freeze for at least two hours, or until firm.
- Make the Streusel: In a medium bowl, whisk together the flour, sugar and cinnamon. Stir in the pecans, then use a fork to mix in the melted butter, ensuring that all of the ingredients are moistened. Refrigerate while you prepare the muffins.
- Make the Muffins: Preheat oven to 350 degrees F. Line a standard 12-cup muffin tin with paper liners; set aside.
- In a large bowl, whisk together the flour, cinnamon, nutmeg, cloves, ginger, allspice, baking soda and salt.
- In a medium bowl, whisk together the sugar, pumpkin, eggs, oil, and vanilla extract.
- Pour the pumpkin mixture over the dry ingredients. Use a rubber spatula to gently combine the batter, mixing just until the dry ingredients are moistened.
- Remove the cream cheese from the freezer, and divide it into 12 1-inch slices.
- Scoop 2 to 3 tablespoons of batter into the muffin cups. Place 1 slice of the cream cheese log in the center of each cup, then divide the remaining batter evenly between the muffin cups, ensuring that the cream cheese is completely covered.
- Sprinkle the pecan streusel on top of each muffin. Press on the streusel lightly to make sure it adheres to the batter.
- Bake until golden, about 20 to 25 minutes. Cool in the pan for about 5 minutes, and then remove muffins to a cooling rack to cool completely. Store in an airtight container in the refrigerator for up to 4 days. Let them come to room temperature before serving, or warm briefly in the microwave to take the chill off. The muffins can be wrapped in plastic wrap and frozen for up to 2 months.
Notes
Did you make this recipe?
Leave a review below, then snap a picture and tag @thebrowneyedbaker on Instagram so I can see it!
[Recipe originally published in October 2010]



I made these cupcakes last night for a work lunch today. I doubled the recipe and I only came home with 1 left over muffin….they were a HUGE hit and had lots asking for the recipe…thank you!
I baked a batch of the muffins tonight and I’m eating one as I type this – delicious! Love the cream cheese filling and the streusel topping. And great idea to freeze the cream cheese before putting it into the muffin cups.
I made these today too. I omitted the pecans as my son is allergic. They are delicious.
I baked these today and they are fantastic! The pumpkin flavor and spices are just right.
I can’t wait to try these muffins. They look so tasty.
I baked these muffins yesterday and so glad i made a double batch becasue they are so delicious!! I know I will be baking these a lot they are my new fav!
These were awesome!! Made these to take to work. My coworkers loved them! Wished I had made a double batch since I took 8 to work and only had 4 left at home! Definitely will make again!
Made these tonight- very easy and super delicious. Great recipe!
I love this recipe. I’ve made these several times and never remember to comment. I’ve made these several times and they are now a family favorite! My husband insists I double the recipe when make them. Thank you so much!
I made these yesterday and I just want to thank you. These were amazing. My husband walked into the kitchen and asked if it was Thanksgiving. The aroma from the oven was out of this world. I will be making more of these.
I’m allergic to pecans. Is there another nut that could replace the pecans and still yield delicious results? Thank you!
Hi Jade, You could definitely use walnuts, they would be great!
Thank you so much. I appreciate your reply!
Okay….trying these very soon they look amazing! Have you ever had Craig’s Crazy Carrot Cheesecake from the Cheesecake Factory? I am thinking these muffins with a carrot cake batter instead of pumpkin would be y-u-m-m-y!!! What do you think?
Ahhh, I remember these :D This is the first recipe I ever found from your site! I made these around Thanksgiving time last year, and I’ve been a dedicated fan ever since.
Thank you so much!
P.S.
These were absolutely wonderful ^.^
You have the most amazing blog! I love it! I have one questions….
On Step 5 it says “In a medium bowl, whisk together the sugar, pumpkin, eggs, oil, and vanilla.”
the only vanilla I see in the recipe is for the cream cheese filling was that just a typo?
Not tryingto correct you or anything I just dont want to mess up the recipe!
Hi Cassie, Sorry for that oversight. It is 1/2 teaspoon vanilla, I have now corrected in the recipe. Thank you for bringing it to my attention! Enjoy the muffins!
Oops! Above says add 1/2 tsp vanilla but the recipe I printed says 1 1/2. Which is right? Also, any tips/adjustments for making these as mini muffins? I want to use them as dessert course in a fall wine tasting where we pair wines with small bites.
these are in my oven, can’t wait to try them! i left out the cream cheese though as i didn’t feel like waiting to go to the store :) the ingredients for the muffins don’t list vanilla, but it’s list in the instructions. i added 1/2 tsp.
These sound so good. I copied and printed the recipe and will make them soon. I hope they taste like the ones at Starbucks. I love the combination of flavors of pumpkin and cream cheese.
Thanks for all the inspiration.
I’ve made these twice now and each time they were a huge hit! The second time I added a bit of maple syrup to the cream cheese and it was so good! Had to freeze it a little longer…it actually worked to take the whole package of cream cheese and make two logs at once because once you eat the first batch you are going to want to make another!!! Thank you again!!
Oooh Dena I love the idea of adding maple syrup to the cream cheese mixture, great idea!
Thanks for these Michelle! I made a batch last night, and they are delicious! A coworker actually told me this morning that he shed a single tear when he took a bite.
My muffin tins must be small, because I had too much batter, and the cups were completely full! I didn’t bother getting out another tray for muffins 13 and 14, so it’s a good thing I’m not afraid of raw eggs :) Love licking the bowl!
Awesome to impress coworkers! Glad these were a big hit!
These are wonderful! I love everything pumpkin but these are the best muffins I’ve ever ate! The muffin cups are pretty full but they stayed confined to their area. And the cream cheese in the middle was heaven! I froze mine for about 3 hours and I used low fat cream cheese so it is a little bit runnier but it stayed in the muffin.
Yay! Best muffins ever is a great compliment!
My roommate and I did these last week but weren’t patient enough to let the cream cheese freeze for 2 hours (we probably only waited 45 minutes) and it ended up oozing out the top of the cupcakes and leaving holes inside the cupcake. We learned our lesson ;)
Aww, I’m sorry to hear that but I hope you still enjoyed them!
I bought a bunch of mini loaf pans this week because I need to deliver some gifts to friends of mine. I was going to start scouting for sweet bread recipes when I saw this. Do you see any reason why this would not work in mini loaf pans? Other than time in oven? I think I am going to give it a whirl. Wish me luck!
Amanda
Amanda, that sounds like such a lovely idea! Please let me know how they turn out!
Help! I just made these and while they taste great my cream cheese burst through the top of my muffins instead of staying nicely in the center. What did I do wrong?!
Hi Ali, A couple of things could have contributed to that: (1) If the cream cheese wasn’t thoroughly frozen that could do it; or (2) If you added a bit too much batter on the bottom and the majority wasn’t on top, that could cause it as well.
Just made these. They’re not only gorgeous, but also delicious. Thanks for the recipe.
Yay! You are welcome, so glad you enjoyed them!
These look, as you said, like the perfect muffins. I can’t imagine anything better with a nice strong cup of coffee. Love the bit of cream cheese and streusal top. Lovely photos, too!
Mmm, the addition of the pecan streusel sounds great! :)
Oooh, these look gorgeous! I’m definitely going to be trying them :)
One question though, “pumpkin pie spice” is not something you get in the uk, could you recommend a substitute please??
Thanks!
I made these last night and they’re absolutely AMAZING!!! :D
Thank you so much for posting the recipe!
For anyone who wants them, the UK weights/measure equivalents will be on my blog by the weekend, including my substitute for the pumpkin pie spice (which involved simply upping some of the spices & adding some ground ginger).
Thanks again!
Hi Becka, So sorry I am a bit late responding to this, but looks like you did what I was going to suggest! Pumpkin pie spice is a combination of cinnamon, ginger and nutmeg. So glad you liked these!
I use mixed spice.
Becka
Anytime I can’t get an ingredient or item, I usually check http://www.allrecipes.com and someone has a substitute. Great for spice mixes, salad dressing even alcohol!
Love! Such a neat little trick to get the cream cheese in there. I’ll definitely be making these!
These muffins look soo good, especially with the cream cheese filling and streusel topping, which make them special. I’m making these today.
How good do these look? I love love love the center filled with cream cheese. Just perfect and the streusel on top for a perfect crunch! YUMM!
Wow, these look amazing!